species:   Drmel
pid:       MI0017730
parent:    dme-mir-4944
paralog:   
locus:     NT_033777.3:10513005-10513133
matures:   ['UUUCUGCUUCUGCCGCUGAGCA', 'CUUAGUUACAGCUGCAGGAAGA']
srr:       SRR11906542
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram NT_033777.3:10513005-10513133

0 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

                                   ***********************                 ***********************                               
AAAAGUAACUUUCGUAAUCGAAAAAGUUUCGCUUUUUUUUCUGCUUCUGCCGCUGAGCAAGUUUUAAAUAUUACCGCUUAGUUACAGCUGCAGGAAGAAAAGUUAUAAUUAUGGACUACGUACAUAAAU
....(.((((((((....)))..))))).)((((((((((((((..(((..(((((((.................)))))))..)))..)))))))))))))).....(((((.........)))))..
-------------------------------------UUUCUGCUUCUGCCGCUGAGCA---------------------------------------------------------------------- l=22 a=0 c
----------------------------------------------------------------------------CUUAGUUACAGCUGCAGGAAGA------------------------------- l=22 a=0 c*
-----------------------------------------------------------------------------UUAGUUACAGCUGCAGGAAGA------------------------------- l=21 a=1 ma
-------------------------------------UUUCUGCUUCUGCCGCUGAGC----------------------------------------------------------------------- l=21 a=0 ma*

-----------------------------------------------------------------------------UUAGUUACAGCUGCAGGAAGA------------------------------- l=21 a=1 (ma)
------------------------------------UUUUCUGCUUCUGCCGCUGAGC----------------------------------------------------------------------- l=22 a=1 

mb-01011
ax-1011111
ku-01
ss-110111111110
fn-011
